Ramos AM, Usié A, Barbosa P, Barros PM, Capote T, Chaves I, Simões F, Abreu I, Carrasquinho I, Faro C, Guimarães J, Mendonça D, Nóbrega F, Rodrigues L, Saibo N, Varela MC, Egas C, Matos J, Miguel CM, Oliveira MM, Ricardo CP, Gonçalves S (2018) The draft genome sequence of cork oak. Sci Data 5:180069 doi: 10.1038/sdata.2018.69

Chaves I, Costa B, Rodrigues A, Bohn A, Miguel CM (2017) miRPursuit - sRNA-workflow analysis using NGS Data to non-model plants. FEBS Letters doi: 10.1002/1873-3468.12746

Pommier C, Cwiek H, Faria D, Papoutsoglou E, Costa B, Laporte M-A, Chaves I, Neveu P, Cornut G, Ruiz M (2018) Plant Phenotype Experiment Ontology (PPEO) (http://purl.org/ppeo)

Michotey C, Chaves I (2017) Woody Plant Ontology (WPO) Crop Ontology (http://www.cropontology.org/ontology/CO_357/Woody%20Plant%20Ontology)

Costa BV, Faria D, Chaves I, Miguel CM (2018) PHENO - the BrAPI endpoint provided by the Portuguese node of ELIXIR. https://brapi.biodata.pt

Teixeira, M.C., Monteiro, P.T., Palma, M., Catarina, C., Godinho, C.P., Pais, P., Cavalheiro, M., Antunes, M., Lemos, A., Pedreira, T., Sá-Correia, I., “YEASTRACT, an upgraded database for the analysis of transcription regulatory networks in Saccharomyces cerevisiae." Nucleic Acids Research, 46: D348-D353, 2018.               

Monteiro, P.T., Pais, P., Costa, C., Manna, S., Sá-Correia, I., Teixeira, M.C., “The PathoYeastract database: an information system for the analysis of gene and genomic transcription regulation in pathogenic yeasts", Nucleic Acids Research, 45: D597-D603, 2017.           

N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2018) Large Scale Analyses and Visualization of Adaptive Amino Acid Changes Projects. Interdisciplinary Sciences: Computational Life Sciences. https://doi.org/10.1007/s12539-018-0282-7

N. Vázquez, C.P. Vieira, B.S.R. Amorin, A. Torres, H. López-Fernández, F. Fdez-Riverola, J.L.R. Sousa, M. Reboiro-Jato, J. Vieira (2017) Automated Collection and Sharing of Adaptive Amino Acid Changes Data. 11th International Conference on Practical Applications of Computational Biology & Bioinformatics. Porto, Portugal. https://doi.org/10.1007/978-3-319-60816-7_3

Hugo López-Fernández, Pedro Duque, Sílvia Henriques, Noé Vázquez, Florentino Fdez-Riverola, Cristina P. Vieira, Miguel Reboiro-Jato and Jorge Vieira. 2018. A Bioinformatics Protocol for Quickly Creating Large-Scale Phylogenetic Trees - 12th International Conference on Practical Applications of Computational Biology & Bioinformatics. Toledo, Spain.

Noé Vázquez, Sara Rocha, Hugo López-Fernández, André Torres, Rui Camacho, Florentino Fdez-Riverola, Jorge Vieira, Cristina P. Vieira and Miguel Reboiro-Jato. 2018. EvoPPI: a Web Application to Compare Protein-Protein Interactions (PPIs) From Different Databases and Species - 12th International Conference on Practical Applications of Computational Biology & Bioinformatics. Toledo, Spain.