A pipeline with emphasis on SNP detection. It will detect SNPs in NGS data where no reference sequence nor strain information is available.
Please cite:
Francisco Pina-Martins, Bruno M. Vieira, Sofia G. Seabra, Dora Batista and Octávio S. Paulo 2016. 4Pipe4 – A 454 data analysis pipeline for SNP detection in datasets with no reference sequence or strain information. BMC Bioinformatics, 17:46.